Protein Information

Protein ZmSBP15
ZmSBP15 is a protein in the SBP family.
Information
TF Name:	ZmSBP15
Species:	Maize
TF Family:	SBP
Gene Name(Synonym):	LG1
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

ZmSBP15 is a protein in the SBP family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
	PF03110
Zm00001eb067740_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Gene ID	Type	Sequence	FIMO	Position
Zm00001d002005	DAPseq	sequence	fimo	position
Zm00001d002005	DAPseq	sequence	fimo	position
Zm00001d002005	ChIPseq	sequence	fimo	position
Zm00001d002005	PChIPseq	sequence	fimo	position

Interactions where ZmSBP15 is the regulator

There are no protein-dna interactions that fit this criteria.

Interactions where ZmSBP15 is the target
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There are 79 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb067740_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MMNLSAAANGRDEFPPYVVPSNAAAPPPSLLPTMEQQQESSIHREHHQLLGYNLEANSLALLPPSNAAAAHHHTTFAGGH
SPHDILHFYPPPSAASHYLAAAGGNPYSHLVSAPGTTFHQTSSSYYPPAAAAQAAPEYYFPTLVSSAEENMASFAATQLG
LNLGYRTYFPPRGGYTYGHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDD
AKKSCRKRLADHNRRRRKSKPSDADAGDKKRAHANKAAAAKDKAESSSKNMDIGDGLGAQILGSALLSKEQDQAMDLGEV
VKEAVDPKGKASMQQHYGFPFHSSSAGSCFPQTQAVSSDTTSNIGQVQEPSLGFHHHQHHQHSNILQLGQAMFDLDFDH

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF03110
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Nucleotide Sequence
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ACTCACTCCACCACCACTCGTTCCA...

GRMZM2G036297_T01 from maize genome v3

Related TFome: pUT5222

Amino Acid Sequence
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Nucleotide Sequence
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CCACCGAGCTCTCCGCTAAGCGCTG...

Zm00001d002005_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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CGATCGATCTCCACCGAGCTCTCCG...

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Protein ZmSBP15

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmSBP15 is the regulator

Interactions where ZmSBP15 is the target
Expand

Zm00001eb067740_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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Expand

GRMZM2G036297_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Expand

Zm00001d002005_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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